Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| flavodoxin family protein | TM1040_RS18255 | Not Available | + | 2909535 - 2910020 | 17241.8 |
| hypothetical protein | TM1040_RS20110 | Not Available | - | 2910088 - 2910621 | 18803.0 |
| dna polymerase i | TM1040_RS18260 | Not Available | + | 2910652 - 2913459 | 103015.0 |
| hydroxypyruvate isomerase family protein | TM1040_RS18265 | Not Available | - | 2913628 - 2914395 | 28086.0 |
| duf1285 domain-containing protein | TM1040_RS18270 | Not Available | - | 2914614 - 2915195 | 21307.3 |
| aaa family atpase | TM1040_RS18275 | Not Available | + | 2915260 - 2916267 | 36439.0 |
| duf58 domain-containing protein | TM1040_RS18280 | Not Available | + | 2916264 - 2917172 | 33820.5 |
| duf4159 domain-containing protein | TM1040_RS18285 | Not Available | + | 2917169 - 2919958 | 98707.2 |
| membrane protein | TM1040_RS18290 | Not Available | + | 2920004 - 2922046 | 74160.2 |
| 2-keto-4-pentenoate hydratase | TM1040_RS18295 | Not Available | - | 2922245 - 2923081 | 28713.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.