Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| d-ta family plp-dependent enzyme | TM1040_RS18205 | Not Available | + | 2900649 - 2901704 | 37391.0 |
| sugar kinase | TM1040_RS18210 | Not Available | + | 2901701 - 2902627 | 32336.1 |
| rida family protein | TM1040_RS18215 | Not Available | + | 2902654 - 2903043 | 14055.7 |
| s41 family peptidase | TM1040_RS18220 | Not Available | - | 2903128 - 2904465 | 47639.1 |
| murein hydrolase activator envc family protein | TM1040_RS18225 | Not Available | - | 2904473 - 2905618 | 39896.0 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | TM1040_RS18230 | Not Available | - | 2905615 - 2907135 | 53566.7 |
| duf1203 domain-containing protein | TM1040_RS18235 | Not Available | + | 2907361 - 2907822 | 17203.7 |
| gnat family n-acetyltransferase | TM1040_RS18240 | Not Available | - | 2907826 - 2908299 | 17811.0 |
| abc transporter atp-binding protein | TM1040_RS18245 | Not Available | - | 2908299 - 2909228 | 33507.5 |
| zinc-finger domain-containing protein | TM1040_RS18250 | Not Available | + | 2909299 - 2909481 | 6722.91 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.