Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | TM1040_RS18155 | Not Available | - | 2887058 - 2887870 | 29934.8 |
| abc transporter permease | TM1040_RS18160 | Not Available | - | 2887867 - 2888775 | 32825.2 |
| abc transporter permease | TM1040_RS18165 | Not Available | - | 2888775 - 2889752 | 35394.9 |
| abc transporter substrate-binding protein | TM1040_RS18170 | Not Available | - | 2889841 - 2891496 | 61161.4 |
| response regulator | TM1040_RS18175 | Not Available | + | 2891848 - 2895138 | 120808.0 |
| murr/rpir family transcriptional regulator | TM1040_RS18180 | Not Available | - | 2895144 - 2896046 | 31051.3 |
| trap transporter small permease | TM1040_RS18185 | Not Available | + | 2896222 - 2896743 | 18979.8 |
| trap transporter large permease | TM1040_RS18190 | Not Available | + | 2896740 - 2898026 | 44598.9 |
| dctp family trap transporter solute-binding subunit | TM1040_RS18195 | Not Available | + | 2898076 - 2899119 | 36759.2 |
| m81 family metallopeptidase | TM1040_RS18200 | Not Available | + | 2899183 - 2900649 | 52231.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.