Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tripartite tricarboxylate transporter substrate binding protein | TM1040_RS18105 | Not Available | - | 2875403 - 2876383 | 34101.6 |
| response regulator transcription factor | TM1040_RS18110 | Not Available | + | 2876486 - 2877151 | 24817.6 |
| sensor histidine kinase | TM1040_RS18115 | Not Available | + | 2877148 - 2878533 | 49803.1 |
| abc transporter substrate-binding protein | TM1040_RS18120 | Not Available | + | 2878503 - 2879540 | 38303.7 |
| 1-deoxy-d-xylulose-5-phosphate synthase n-terminal domain-containing protein | TM1040_RS18125 | Not Available | - | 2879545 - 2881929 | 86899.9 |
| methionine gamma-lyase | TM1040_RS18130 | Not Available | - | 2881941 - 2883143 | 43018.8 |
| lrp/asnc family transcriptional regulator | TM1040_RS18135 | Not Available | + | 2883257 - 2883715 | 17208.7 |
| beta-n-acetylhexosaminidase | TM1040_RS18140 | Not Available | - | 2883772 - 2885655 | 69289.0 |
| gnat family n-acetyltransferase | TM1040_RS18145 | Not Available | - | 2885691 - 2886146 | 16228.8 |
| atp-binding cassette domain-containing protein | TM1040_RS18150 | Not Available | - | 2886139 - 2887068 | 33770.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.