Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor | TM1040_RS18055 | Not Available | + | 2866340 - 2866897 | 20469.3 |
| sensor histidine kinase | TM1040_RS18060 | Not Available | + | 2866903 - 2868744 | 67564.8 |
| exopolysaccharide biosynthesis protein | TM1040_RS18065 | Not Available | - | 2868869 - 2869456 | 20708.1 |
| hypothetical protein | TM1040_RS18070 | Not Available | + | 2869670 - 2870158 | 17110.9 |
| entericidin | TM1040_RS18075 | Not Available | + | 2870171 - 2870299 | 4509.43 |
| abrb family transcriptional regulator | TM1040_RS18080 | Not Available | - | 2870342 - 2871370 | 35472.8 |
| citryl-coa lyase | TM1040_RS18085 | Not Available | - | 2871357 - 2872124 | 27549.9 |
| caib/baif coa transferase family protein | TM1040_RS18090 | Not Available | - | 2872121 - 2873308 | 42382.7 |
| tripartite tricarboxylate transporter permease | TM1040_RS18095 | Not Available | - | 2873298 - 2874818 | 52672.5 |
| tripartite tricarboxylate transporter tctb family protein | TM1040_RS18100 | Not Available | - | 2874831 - 2875316 | 17549.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.