Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | TM1040_RS18005 | Not Available | - | 2859216 - 2859830 | 22209.2 |
| abc transporter permease | TM1040_RS18010 | Not Available | + | 2860077 - 2861120 | 37640.5 |
| nickel transporter permease | TM1040_RS18015 | Not Available | + | 2861130 - 2862035 | 32312.4 |
| abc transporter atp-binding protein | TM1040_RS18020 | Not Available | + | 2862032 - 2862871 | 30935.0 |
| abc transporter atp-binding protein | TM1040_RS18025 | Not Available | + | 2862868 - 2863617 | 27189.0 |
| gaf domain-containing protein | TM1040_RS18030 | Not Available | + | 2863621 - 2864109 | 17643.1 |
| duf1328 domain-containing protein | TM1040_RS20105 | Not Available | + | 2864339 - 2864500 | 5558.25 |
| dps family protein | TM1040_RS18040 | Not Available | + | 2864555 - 2865052 | 18293.8 |
| response regulator | TM1040_RS18045 | Not Available | - | 2865208 - 2866029 | 29125.8 |
| nepr family anti-sigma factor | TM1040_RS18050 | Not Available | + | 2866142 - 2866339 | 7097.08 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.