Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| n(2)-acetyl-l-2,4-diaminobutanoate deacetylase doeb | TM1040_RS17905 | Not Available | - | 2835568 - 2836560 | 35657.5 |
| glxa family transcriptional regulator | TM1040_RS17910 | Not Available | - | 2836696 - 2837706 | 36541.9 |
| chap domain-containing protein | TM1040_RS17915 | Not Available | + | 2838045 - 2838587 | 19748.7 |
| prc-barrel domain-containing protein | TM1040_RS17920 | Not Available | - | 2838703 - 2839605 | 31965.3 |
| hth-type transcriptional regulator bhcr | TM1040_RS17925 | Not Available | - | 2839728 - 2840570 | 30578.6 |
| l-aspartate--glyoxylate aminotransferase bhca | TM1040_RS17930 | Not Available | + | 2840738 - 2841928 | 42155.3 |
| beta-hydroxyaspartate dehydratase bhcb | TM1040_RS17935 | Not Available | + | 2841928 - 2842893 | 34798.7 |
| 3-hydroxy-d-aspartate aldolase bhcc | TM1040_RS17940 | Not Available | + | 2842959 - 2844122 | 41760.5 |
| iminosuccinate reductase bhcd | TM1040_RS17945 | Not Available | + | 2844218 - 2845183 | 34015.6 |
| lysr family transcriptional regulator | TM1040_RS17950 | Not Available | - | 2845236 - 2846147 | 34163.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.