Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| bifunctional folylpolyglutamate synthase/dihydrofolate synthase | TM1040_RS17805 | Not Available | - | 2810634 - 2811905 | 44857.0 |
| acetyl-coa carboxylase, carboxyltransferase subunit beta | TM1040_RS17810 | Not Available | - | 2812060 - 2813022 | 35283.9 |
| cpbp family intramembrane glutamic endopeptidase | TM1040_RS17815 | Not Available | - | 2813085 - 2813969 | 31756.4 |
| abc transporter transmembrane domain-containing protein | TM1040_RS17820 | Not Available | - | 2814095 - 2817148 | 113428.0 |
| hypothetical protein | TM1040_RS17825 | Not Available | + | 2817505 - 2818284 | 27033.6 |
| duf6478 family protein | TM1040_RS17830 | Not Available | + | 2818500 - 2819261 | 29238.3 |
| hypothetical protein | TM1040_RS17835 | Not Available | + | 2819297 - 2819674 | 13795.6 |
| bifunctional transcriptional activator/dna repair enzyme adaa | TM1040_RS17840 | Not Available | - | 2819870 - 2820931 | 38643.5 |
| Trna-arg | Not Available | Not Available | + | 2821104 - 2821181 | Not Available |
| abc transporter atp-binding protein | TM1040_RS17850 | Not Available | - | 2821249 - 2822205 | 33840.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.