Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| queuosine precursor transporter | TM1040_RS17755 | Not Available | + | 2800489 - 2801121 | 22193.7 |
| alternative ribosome rescue aminoacyl-trna hydrolase arfb | TM1040_RS17760 | Not Available | + | 2801738 - 2802157 | 15966.4 |
| p1 family peptidase | TM1040_RS17765 | Not Available | + | 2802298 - 2803320 | 34126.8 |
| dmt family transporter | TM1040_RS17770 | Not Available | + | 2803833 - 2804795 | 33979.4 |
| had family hydrolase | TM1040_RS17775 | Not Available | + | 2804811 - 2805431 | 23748.0 |
| ornithine cyclodeaminase family protein | TM1040_RS17780 | Not Available | + | 2805428 - 2806345 | 33181.6 |
| alpha/beta fold hydrolase | TM1040_RS17785 | Not Available | + | 2806342 - 2807274 | 34679.0 |
| mfs transporter | TM1040_RS17790 | Not Available | - | 2807277 - 2808515 | 43375.9 |
| cell division protein zape | TM1040_RS17795 | Not Available | + | 2808675 - 2809748 | 39998.4 |
| deor/glpr family dna-binding transcription regulator | TM1040_RS17800 | Not Available | + | 2809876 - 2810637 | 27210.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.