Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aldehyde dehydrogenase family protein | TM1040_RS17705 | Not Available | - | 2789859 - 2791367 | 52535.9 |
| saccharopine dehydrogenase family protein | TM1040_RS17710 | Not Available | - | 2791376 - 2792497 | 40371.2 |
| lrp/asnc family transcriptional regulator | TM1040_RS17715 | Not Available | - | 2792625 - 2793053 | 16088.6 |
| yaaa family protein | TM1040_RS17720 | Not Available | - | 2793057 - 2793812 | 27116.4 |
| dna helicase recq | TM1040_RS17725 | Not Available | - | 2793914 - 2795953 | 74460.2 |
| yggt family protein | TM1040_RS17730 | Not Available | - | 2796082 - 2796369 | 11050.2 |
| acyl-coa thioesterase | TM1040_RS17735 | Not Available | + | 2796504 - 2797082 | 21746.2 |
| mfs transporter | TM1040_RS17740 | Not Available | + | 2797133 - 2798515 | 48790.1 |
| penicillin-insensitive murein endopeptidase | TM1040_RS17745 | Not Available | + | 2798512 - 2799435 | 33656.0 |
| esterase-like activity of phytase family protein | TM1040_RS17750 | Not Available | + | 2799408 - 2800334 | 34218.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.