Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aromatic amino acid transaminase | TM1040_RS17605 | Not Available | + | 2768685 - 2769869 | 43077.9 |
| enoyl-coa hydratase/isomerase family protein | TM1040_RS17610 | Not Available | - | 2769971 - 2770585 | 21290.2 |
| sdr family oxidoreductase | TM1040_RS17615 | Not Available | - | 2770582 - 2771331 | 26114.4 |
| duf2125 domain-containing protein | TM1040_RS17620 | Not Available | + | 2771466 - 2772980 | 53250.7 |
| tldd/pmba family protein | TM1040_RS17625 | Not Available | + | 2773117 - 2774463 | 47051.1 |
| inositol monophosphatase family protein | TM1040_RS17630 | Not Available | + | 2774450 - 2775250 | 28673.6 |
| 3-deoxy-d-manno-octulosonic acid transferase | TM1040_RS17635 | Not Available | + | 2775250 - 2776446 | 44017.0 |
| tetraacyldisaccharide 4'-kinase | TM1040_RS17640 | Not Available | + | 2776433 - 2777434 | 35391.9 |
| dsba family protein | TM1040_RS17645 | Not Available | - | 2777471 - 2778172 | 25249.8 |
| duf721 domain-containing protein | TM1040_RS17650 | Not Available | - | 2778169 - 2778696 | 19166.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.