Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | TM1040_RS17310 | Not Available | - | 2715494 - 2715730 | 8423.63 |
| methionyl-trna formyltransferase | TM1040_RS17315 | Not Available | - | 2715727 - 2716653 | 32727.6 |
| peptide deformylase | TM1040_RS17320 | Not Available | - | 2716810 - 2717307 | 18559.7 |
| peptide deformylase | TM1040_RS17325 | Not Available | - | 2717304 - 2717813 | 18957.5 |
| peptide deformylase | TM1040_RS17330 | Not Available | - | 2717810 - 2718334 | 19710.9 |
| maly/patb family protein | TM1040_RS17335 | Not Available | + | 2718493 - 2719665 | 43617.0 |
| hypothetical protein | TM1040_RS17340 | Not Available | - | 2719778 - 2720146 | 13652.4 |
| glutathione s-transferase family protein | TM1040_RS17345 | Not Available | + | 2720387 - 2721361 | 37498.0 |
| threonine-phosphate decarboxylase cobd | TM1040_RS17350 | Not Available | + | 2721455 - 2722450 | 35889.3 |
| adenosylcobinamide-phosphate synthase cbib | TM1040_RS17355 | Not Available | + | 2722447 - 2723358 | 32242.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.