Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tmao reductase system periplasmic protein tort | TM1040_RS01695 | Not Available | - | 255172 - 256242 | 37544.6 |
| biotin-dependent carboxyltransferase family protein | TM1040_RS01700 | Not Available | - | 256334 - 257305 | 34295.4 |
| 5-oxoprolinase subunit b family protein | TM1040_RS01705 | Not Available | - | 257295 - 258170 | 33111.4 |
| acetyl-coa carboxylase biotin carboxylase subunit | TM1040_RS01710 | Not Available | - | 258167 - 259543 | 48836.4 |
| acetyl-coa carboxylase | TM1040_RS01715 | Not Available | - | 259547 - 259780 | 8164.65 |
| 5-oxoprolinase subunit pxpa | TM1040_RS01720 | Not Available | - | 259817 - 260596 | 28421.1 |
| lysr family transcriptional regulator | TM1040_RS01725 | Not Available | + | 260876 - 261793 | 34339.0 |
| cupin domain-containing protein | TM1040_RS01730 | Not Available | - | 261790 - 262362 | 20629.7 |
| 4-aminobutyrate--2-oxoglutarate transaminase | TM1040_RS01735 | Not Available | + | 262509 - 263786 | 44979.2 |
| nad-dependent succinate-semialdehyde dehydrogenase | TM1040_RS01740 | Not Available | + | 263788 - 265257 | 51929.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.