Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| substrate-binding periplasmic protein | TM1040_RS01545 | Not Available | - | 220725 - 221492 | 27466.3 |
| hypothetical protein | TM1040_RS01550 | Not Available | - | 221636 - 222574 | 33707.2 |
| vwa domain-containing protein | TM1040_RS01555 | Not Available | - | 222584 - 224017 | 49834.8 |
| hypothetical protein | TM1040_RS01560 | Not Available | - | 224021 - 224833 | 29087.9 |
| alpha/beta fold hydrolase | TM1040_RS01565 | Not Available | + | 224962 - 226599 | 59469.9 |
| arac family transcriptional regulator | TM1040_RS01570 | Not Available | - | 226645 - 227544 | 32535.0 |
| (2fe-2s)-binding protein | TM1040_RS01575 | Not Available | + | 227859 - 228323 | 16676.9 |
| xanthine dehydrogenase family protein molybdopterin-binding subunit | TM1040_RS01580 | Not Available | + | 228329 - 230506 | 76896.3 |
| atp-binding protein | TM1040_RS01585 | Not Available | - | 230751 - 233225 | 90127.5 |
| winged helix-turn-helix domain-containing protein | TM1040_RS01590 | Not Available | - | 233222 - 233956 | 27331.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.