Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 5-guanidino-2-oxopentanoate decarboxylase | TM1040_RS01495 | Not Available | + | 208049 - 209620 | 55217.2 |
| carbohydrate abc transporter permease | TM1040_RS01500 | Not Available | - | 209629 - 210435 | 29919.2 |
| carbohydrate abc transporter permease | TM1040_RS01505 | Not Available | - | 210432 - 211307 | 32777.7 |
| abc transporter substrate-binding protein | TM1040_RS01510 | Not Available | - | 211368 - 212645 | 46086.0 |
| abc transporter atp-binding protein | TM1040_RS01515 | Not Available | - | 212764 - 213834 | 38318.7 |
| hybrid-cluster nad(p)-dependent oxidoreductase | TM1040_RS01520 | Not Available | - | 214064 - 215131 | 38593.9 |
| aromatic ring-hydroxylating oxygenase subunit alpha | TM1040_RS01525 | Not Available | - | 215137 - 216363 | 46093.0 |
| c4-dicarboxylate trap transporter substrate-binding protein | TM1040_RS01530 | Not Available | + | 216964 - 217980 | 36956.4 |
| trap transporter small permease subunit | TM1040_RS01535 | Not Available | + | 218070 - 218747 | 24427.3 |
| trap transporter large permease | TM1040_RS01540 | Not Available | + | 218740 - 220140 | 49530.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.