Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| doda-type extradiol aromatic ring-opening family dioxygenase | TM1040_RS01245 | Not Available | - | 149646 - 150440 | 28878.2 |
| duf1244 domain-containing protein | TM1040_RS01250 | Not Available | - | 150625 - 150957 | 12706.9 |
| calcium/sodium antiporter | TM1040_RS01255 | Not Available | + | 151141 - 152124 | 33022.4 |
| crtac1 family protein | TM1040_RS01260 | Not Available | - | 152144 - 153709 | 55966.1 |
| rok family transcriptional regulator | TM1040_RS01265 | Not Available | - | 153696 - 154910 | 43576.5 |
| d-xylose abc transporter substrate-binding protein | TM1040_RS01270 | Not Available | + | 155096 - 156124 | 35391.4 |
| sugar abc transporter permease | TM1040_RS01275 | Not Available | + | 156210 - 157508 | 46029.5 |
| atp-binding cassette domain-containing protein | TM1040_RS01280 | Not Available | + | 157508 - 158299 | 28244.2 |
| methyl-accepting chemotaxis protein | TM1040_RS01285 | Not Available | + | 158482 - 160731 | 79028.8 |
| abc transporter substrate-binding protein | TM1040_RS01290 | Not Available | + | 161441 - 162601 | 40100.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.