Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sis domain-containing protein | TM1040_RS01140 | Not Available | - | 129969 - 130997 | 35835.6 |
| gntr family transcriptional regulator | TM1040_RS01145 | Not Available | - | 131072 - 131827 | 27888.3 |
| badf/badg/bcra/bcrd atpase family protein | TM1040_RS01150 | Not Available | - | 131814 - 132701 | 30392.4 |
| n-acetylmuramic acid 6-phosphate etherase | TM1040_RS01155 | Not Available | + | 132892 - 133797 | 30511.4 |
| abc transporter substrate-binding protein | TM1040_RS01160 | Not Available | + | 133822 - 135075 | 45216.5 |
| carbohydrate abc transporter permease | TM1040_RS01165 | Not Available | + | 135160 - 136074 | 34266.9 |
| carbohydrate abc transporter permease | TM1040_RS01170 | Not Available | + | 136087 - 136926 | 30848.8 |
| gfo/idh/moca family protein | TM1040_RS01175 | Not Available | + | 137006 - 138040 | 37439.3 |
| abc transporter atp-binding protein | TM1040_RS01180 | Not Available | + | 138037 - 139032 | 36087.3 |
| choline-responsive transcriptional repressor beti | TM1040_RS01185 | Not Available | + | 139179 - 139754 | 21027.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.