Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | TM1040_RS01090 | Not Available | - | 117760 - 118725 | 35326.5 |
| abc transporter atp-binding protein | TM1040_RS01095 | Not Available | - | 118725 - 119699 | 34442.1 |
| abc transporter permease | TM1040_RS01100 | Not Available | - | 119699 - 120640 | 33848.2 |
| abc transporter permease | TM1040_RS01105 | Not Available | - | 120640 - 121620 | 36076.4 |
| abc transporter substrate-binding protein | TM1040_RS01110 | Not Available | - | 121684 - 123258 | 57301.4 |
| abc transporter substrate-binding protein | TM1040_RS01115 | Not Available | - | 123368 - 124948 | 58274.7 |
| hypothetical protein | TM1040_RS01120 | Not Available | - | 125313 - 125930 | 21847.5 |
| xanthine dehydrogenase family protein molybdopterin-binding subunit | TM1040_RS01125 | Not Available | - | 125943 - 128207 | 80769.1 |
| (2fe-2s)-binding protein | TM1040_RS01130 | Not Available | - | 128211 - 128669 | 16204.5 |
| n-acetylglucosamine-6-phosphate deacetylase | TM1040_RS01135 | Not Available | - | 128830 - 129972 | 39461.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.