Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trap transporter large permease | TM1040_RS01040 | Not Available | - | 103016 - 104521 | 53265.0 |
| trap transporter small permease | TM1040_RS01045 | Not Available | - | 104518 - 105099 | 20991.2 |
| trap transporter substrate-binding protein | TM1040_RS01050 | Not Available | - | 105191 - 106237 | 38275.6 |
| putative bifunctional diguanylate cyclase/phosphodiesterase | TM1040_RS01055 | Not Available | - | 106447 - 108345 | 69418.4 |
| choline-sulfatase | TM1040_RS01060 | Not Available | + | 108763 - 110277 | 57346.5 |
| flagellin | TM1040_RS01065 | Not Available | - | 110420 - 111265 | 28955.1 |
| cytochrome-c peroxidase | TM1040_RS01070 | Not Available | + | 111923 - 112831 | 33903.8 |
| putative bifunctional diguanylate cyclase/phosphodiesterase | TM1040_RS01075 | Not Available | + | 112844 - 114946 | 77516.9 |
| nadh:flavin oxidoreductase | TM1040_RS01080 | Not Available | - | 114961 - 117006 | 75170.7 |
| tetr/acrr family transcriptional regulator | TM1040_RS01085 | Not Available | + | 117100 - 117723 | 23601.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.