Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf429 domain-containing protein | TM1040_RS00980 | Not Available | + | 92141 - 92704 | 20288.0 |
| hypothetical protein | TM1040_RS00985 | Not Available | + | 93127 - 93603 | 17850.0 |
| hypothetical protein | TM1040_RS19875 | Not Available | - | 93987 - 94586 | 21713.1 |
| hypothetical protein | TM1040_RS00995 | Not Available | - | 95143 - 96261 | 42621.4 |
| duf3800 domain-containing protein | TM1040_RS01000 | Not Available | - | 96406 - 97101 | 26405.9 |
| hypothetical protein | TM1040_RS01010 | Not Available | - | 98105 - 99355 | 47194.5 |
| phnd/ssua/transferrin family substrate-binding protein | TM1040_RS20445 | Not Available | - | 99999 - 100130 | 4413.15 |
| is3-like element issisp1 family transposase | TM1040_RS01020 | Not Available | - | 100360 - 101456 | 42519.2 |
| Trna-arg | Not Available | Not Available | + | 101719 - 101795 | Not Available |
| laci family dna-binding transcriptional regulator | TM1040_RS01035 | Not Available | + | 101920 - 102945 | 37193.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.