Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| urea carboxylase-associated family protein | TM1040_RS00930 | Not Available | - | 79360 - 80217 | 31423.9 |
| type iii plp-dependent enzyme | TM1040_RS00935 | Not Available | - | 80347 - 81519 | 42038.5 |
| lysr family transcriptional regulator | TM1040_RS00940 | Not Available | - | 82004 - 82963 | 35676.0 |
| abc transporter substrate-binding protein | TM1040_RS00945 | Not Available | + | 83029 - 84546 | 55158.8 |
| abc transporter permease | TM1040_RS00950 | Not Available | + | 84619 - 85536 | 33482.8 |
| abc transporter permease | TM1040_RS00955 | Not Available | + | 85541 - 86449 | 32821.8 |
| abc transporter atp-binding protein | TM1040_RS00960 | Not Available | + | 86470 - 88485 | 72933.8 |
| succinyl-diaminopimelate desuccinylase | TM1040_RS00965 | Not Available | + | 88482 - 89669 | 42528.2 |
| capa family protein | TM1040_RS00970 | Not Available | + | 89666 - 90961 | 47483.1 |
| tyrosine-type recombinase/integrase | TM1040_RS00975 | Not Available | + | 91339 - 91971 | 24015.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.