Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | TM1040_RS00830 | Not Available | + | 57652 - 59874 | 81859.6 |
| biliverdin-producing heme oxygenase | TM1040_RS00835 | Not Available | + | 59876 - 60520 | 23074.7 |
| nifu family protein | TM1040_RS00840 | Not Available | + | 60682 - 61245 | 20047.7 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsab | TM1040_RS00845 | Not Available | + | 61469 - 62116 | 22379.8 |
| gnat family n-acetyltransferase | TM1040_RS00850 | Not Available | + | 62120 - 62554 | 15790.6 |
| bmp family protein | TM1040_RS00855 | Not Available | + | 62691 - 63686 | 34632.9 |
| abc transporter atp-binding protein | TM1040_RS00860 | Not Available | + | 63876 - 65405 | 55800.8 |
| abc transporter permease | TM1040_RS00865 | Not Available | + | 65406 - 66500 | 38495.2 |
| abc transporter permease | TM1040_RS00870 | Not Available | + | 66500 - 67507 | 35329.9 |
| sulfite exporter taue/safe family protein | TM1040_RS00875 | Not Available | + | 67704 - 68621 | 32120.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.