Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxybenzoate octaprenyltransferase | TM1040_RS00780 | Not Available | + | 48203 - 49165 | 35550.5 |
| ompa family protein | TM1040_RS00785 | Not Available | + | 49247 - 51208 | 69474.5 |
| hypothetical protein | TM1040_RS00790 | Not Available | + | 51205 - 51525 | 12339.5 |
| nuclear transport factor 2 family protein | TM1040_RS00795 | Not Available | + | 51542 - 51922 | 13996.2 |
| phosphatidylserine decarboxylase | TM1040_RS00800 | Not Available | + | 52081 - 52830 | 26955.9 |
| cdp-diacylglycerol--serine o-phosphatidyltransferase | TM1040_RS00805 | Not Available | + | 52823 - 53590 | 27751.4 |
| class i sam-dependent methyltransferase | TM1040_RS00810 | Not Available | + | 53592 - 54212 | 22709.7 |
| hint domain-containing protein | TM1040_RS00815 | Not Available | + | 54543 - 55976 | 50587.9 |
| Trna-leu | Not Available | Not Available | + | 56033 - 56119 | Not Available |
| lipoyl(octanoyl) transferase lipb | TM1040_RS00825 | Not Available | + | 56519 - 57196 | 24985.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.