Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l-threonylcarbamoyladenylate synthase | TM1040_RS00680 | Not Available | + | 28722 - 29681 | 32723.0 |
| uracil-dna glycosylase family protein | TM1040_RS00685 | Not Available | + | 29742 - 30509 | 28354.4 |
| metallophosphoesterase | TM1040_RS00690 | Not Available | + | 30534 - 31142 | 21014.9 |
| lyse family translocator | TM1040_RS00695 | Not Available | + | 31142 - 31765 | 21135.5 |
| molybdenum cofactor biosynthesis protein b | TM1040_RS00700 | Not Available | + | 31771 - 32313 | 20075.8 |
| efflux rnd transporter periplasmic adaptor subunit | TM1040_RS00705 | Not Available | + | 32428 - 33891 | 52499.6 |
| efflux rnd transporter permease subunit | TM1040_RS00710 | Not Available | + | 33952 - 37365 | 123101.0 |
| nudix domain-containing protein | TM1040_RS00715 | Not Available | - | 37311 - 37790 | 16937.2 |
| protein-disulfide reductase dsbd domain-containing protein | TM1040_RS00720 | Not Available | - | 37867 - 38691 | 29645.9 |
| yqge/algh family protein | TM1040_RS00725 | Not Available | + | 38870 - 39424 | 19527.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.