Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | TM1040_RS00630 | Not Available | - | 17544 - 19208 | 60980.2 |
| taud/tfda dioxygenase family protein | TM1040_RS00635 | Not Available | - | 19304 - 20188 | 33119.1 |
| fad-binding oxidoreductase | TM1040_RS00640 | Not Available | - | 20200 - 21609 | 51405.3 |
| amidohydrolase family protein | TM1040_RS00645 | Not Available | - | 21606 - 22877 | 44299.0 |
| creatininase family protein | TM1040_RS00650 | Not Available | - | 22874 - 23665 | 27937.1 |
| glutamine amidotransferase-related protein | TM1040_RS00655 | Not Available | - | 23662 - 24357 | 25974.4 |
| rida family protein | TM1040_RS00660 | Not Available | + | 24485 - 24871 | 14099.9 |
| duf6173 family protein | TM1040_RS00665 | Not Available | - | 25251 - 25712 | 16986.1 |
| mbl fold metallo-hydrolase | TM1040_RS00670 | Not Available | - | 25759 - 26802 | 39197.6 |
| acyl-coa dehydrogenase | TM1040_RS00675 | Not Available | - | 26802 - 28514 | 60999.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.