Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Genome Summary
Ruegeria sp. TM1040
Accession NumberNC_008043.1
Gene Summary
Adenine Count
167632 bp
Thymine Count
166322 bp
Guanine Count
242456 bp
Cytosine Count
245378 bp
Genome Length
821788 bp
Protein-coding Genes
731 genes
Non-Coding Genes
27 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| mannonate dehydratase | TM1040_RS00525 | Not Available | + | 127810 - 128979 | 43009.2 |
| hypothetical protein | TM1040_RS00535 | Not Available | - | 129842 - 130288 | 16338.4 |
| hypothetical protein | TM1040_RS20160 | Not Available | + | 130707 - 130859 | 5563.66 |
| substrate-binding domain-containing protein | TM1040_RS00540 | Not Available | + | 6 - 827 | 28719.3 |
| helix-turn-helix transcriptional regulator | TM1040_RS00545 | Not Available | + | 882 - 1769 | 32675.0 |
| abc transporter permease | TM1040_RS00550 | Not Available | - | 1785 - 2594 | 28810.1 |
| abc transporter atp-binding protein | TM1040_RS00555 | Not Available | - | 2587 - 3354 | 28245.3 |
| abc transporter substrate-binding protein | TM1040_RS00560 | Not Available | - | 3409 - 4425 | 34972.8 |
| gntr family transcriptional regulator | TM1040_RS00565 | Not Available | - | 4480 - 5145 | 25087.1 |
| amino acid abc transporter substrate-binding protein | TM1040_RS00570 | Not Available | + | 5407 - 6159 | 26784.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.