Photorhabdus asymbiotica str. ATCC 43949

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Photorhabdus

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusPhotorhabdus
SpeciesPhotorhabdus asymbiotica
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photorhabdus asymbiotica str. ATCC 43949

Accession NumberNC_012962.1

Gene Summary

Adenine Count

1459060 bp

Thymine Count

1470798 bp

Guanine Count

1064347 bp

Cytosine Count

1070603 bp

Genome Length

5064808 bp

Protein-coding Genes

4457031 genes

Non-Coding Genes

607777 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
valine--pyruvate transaminasePAU_RS01120P09053-244381 - 24563446744.8
dna-3-methyladenine glycosylase iPAU_RS01125P05100-246444 - 24700121512.0
glycine--trna ligase subunit alphaPAU_RS01130Q7N9M7+247197 - 24811134773.3
glycine--trna ligase subunit betaPAU_RS01135Q7MB99+248121 - 25019076682.3
Trna-proNot AvailableNot Available+250377 - 250453Not Available
type ii toxin-antitoxin system rele/pare family toxinPAU_RS26005Not Available-250836 - 25123714744.8
dipeptide abc transporter periplasmic-binding protein dppaPAU_RS01155P23847+252159 - 25376660355.3
dipeptide abc transporter permease dppbPAU_RS01160P0AEG0+253983 - 25500237372.2
dipeptide abc transporter permease dppcPAU_RS01165P0AEG3+255014 - 25591632301.6
dipeptide abc transporter atp-binding proteinPAU_RS01170P0AAG1+255929 - 25690936058.0

Displaying genes 501 – 510 of 4508 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

272 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 272 metabolites