Gluconobacter oxydans 621H

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Acetobacterales

Family

Acetobacteraceae

Genus

Gluconobacter

Description

Gluconobacter oxydans 621H.Genome sequencing of Gluconobacter oxydans 621H (DSM 2343) has identified a number of membrane-bound dehydrogenases. The glucose/sorbitol dehydrogenase is responsible for the oxidation of D-sorbitol, gluconate and glycerol, producing L-sorbose, 5-ketogluconate and dihydroxyacetone, respectively. Other identified membrane-bound dehydrogenases include the alcohol, glucose, and sorbitol dehydrogenases, which are involved in acetate, gluconate, and D-fructose formation, respectively. In addition to the dehydrogenases with a recognized substrate, 75 putative dehydrogenase/oxidoreductases, 23 of which are thought to be membrane bound, have been identified in the genome sequence. Expression studies of G. oxydans grown on glucose has shown that a number of these uncharacterized oxidoreductases are transcribed and presumably have a role in cellular metabolism.The plasmids in G. oxydans strain 621H are not homologous to plasmids from other G. oxydans strains. Identified genes include those for plasmid replication, a DNA helicase II, a restriction/modification system, a heavy metal resistance system and, on the megaplasmid, genes for DNA transfer via conjugation. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderAcetobacterales
FamilyAcetobacteraceae
GenusGluconobacter
SpeciesGluconobacter oxydans
Strain621H

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Gluconobacter oxydans 621H
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Gluconobacter oxydans 621H

Accession NumberNC_006675.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

18 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
fita-like ribbon-helix-helix domain-containing proteinGOX_RS00955Not Available+146 - 3979169.08
type ii toxin-antitoxin system vapc family toxinGOX_RS00960Not Available+394 - 81615232.4
duf6118 family proteinGOX_RS15555Not Available+816 - 116912802.2
duf6118 family proteinGOX_RS15560Not Available+1166 - 147111569.2
helix-turn-helix domain-containing proteinGOX_RS00975Not Available-1695 - 209014533.0
hint domain-containing proteinGOX_RS00980Not Available-2153 - 389861648.7
recombinase family proteinGOX_RS14320Not Available+4101 - 469721902.7
recombinase family proteinGOX_RS00985Not Available+4818 - 541422132.1
para family partition atpaseGOX_RS00990Not Available+5523 - 617622992.7
ribbon-helix-helix domain-containing proteinGOX_RS00995Not Available+6173 - 64489866.86

Displaying genes 1 – 10 of 2825 in total

Pathways

23 pathways

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da

Displaying 1–10 of 88 metabolites