Yersinia pseudotuberculosis IP 32953

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia pseudotuberculosis IP 32953 is a Gram-negative, rod-shaped bacterium that thrives at mesophilic temperatures, categorized as a facultative anaerobe and a chemoheterotroph. This organism is part of the genus Yersinia, which includes notable pathogens such as Yersinia pestis, the causative agent of plague. Yersinia pseudotuberculosis primarily resides in the gastrointestinal tracts of animals, especially rodents, and can be found in various other body sites including lymph nodes, intestines, and occasionally in the bloodstream during systemic infection. As a Gram-negative bacterium, Yersinia pseudotuberculosis possesses a thin peptidoglycan layer surrounded by an outer membrane that contains lipopolysaccharides, contributing to its virulence and resilience in diverse environments. Its rod shape (bacillus) facilitates motility and colonization within host tissues. The mesophilic temperature preference allows it to grow optimally at temperatures similar to that of warm-blooded animals, enhancing its ability to infect mammals. Being a facultative anaerobe, Yersinia pseudotuberculosis has the versatility to derive energy through both aerobic respiration and fermentation, depending on the availability of oxygen. This adaptability aids in its survival across various habitats, including anaerobic conditions within the gut. As a chemoheterotroph, it relies on organic compounds for energy and carbon, typically obtained from the host, making it a successful enteric pathogen. Yersinia pseudotuberculosis is associated with gastroenteritis in humans, often transmitted through contaminated food or water. This microbe’s pathogenic mechanisms involve the secretion of virulence factors that enable it to invade host cells, evade immune responses, and establish infection. The study of this bacterium not only provides insights into infectious diseases but also contributes to our understanding of microbial ecology and the interactions between pathogens and their hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia pseudotuberculosis
StrainIP 32953

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Yersinia pseudotuberculosis IP 32953
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityYes

Genome Summary

Yersinia pseudotuberculosis IP 32953

Accession NumberNC_006154.1

Gene Summary

Adenine Count

7907 bp

Thymine Count

7444 bp

Guanine Count

6754 bp

Cytosine Count

5597 bp

Genome Length

27702 bp

Protein-coding Genes

24378 genes

Non-Coding Genes

3324 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Virulence protein msgaYPTB_RS07015P0A1G4-1518769 - 15190119230.93
Phage repressor proteinYPTB_RS07020P03034-1519217 - 151993926280.6
Antitermination protein qYPTB_RS07025Q9T1U3+1520267 - 152069215876.2
Conserved protein of unknown function ygbkYPTB_RS07030Q8YB10+1520903 - 152220745886.0
Aldolase class 2 proteinYPTB_RS07035A0A0H2VA12+1522264 - 152293524121.7
Putative deor transcriptional regulator ygbiYPTB_RS07040P44978+1522938 - 152375029713.1
2-oxo-tetronate isomeraseYPTB_RS07045Q46891+1523726 - 152452030210.2
Hypothetical proteinYPTB_RS07050Not Available+1525116 - 152540611224.8
atp-binding proteinYPTB_RS07055Not Available+1525452 - 152606922599.0
duf2635 domain-containing proteinYPTB_RS07060Not Available+1526074 - 15262687123.55

Displaying genes 1 – 10 of 4271 in total

Pathways

4 pathways

Metabolites

32 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001885Tetra-mu3-sulfido-tetrairon(1+)Fe4S4Chemical structure of Tetra-mu3-sulfido-tetrairon(1+)Not available
Average351.62Da
Monoisotopic351.62748Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00019773,4-dihydroxybenzoateC7H5O4Chemical structure of 3,4-dihydroxybenzoateNot available
Average153.114Da
Monoisotopic153.019332221Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da
BASm0002906all-trans-octaprenyl diphosphateC40H65O7P2Chemical structure of all-trans-octaprenyl diphosphateNot available
Average719.8874Da
Monoisotopic719.4205525Da
BASm0003106D-phenylalanineC9H11NO2Chemical structure of D-phenylalanineNot available
Average165.1891Da
Monoisotopic165.0789786Da
BASm0003317S-methyl-L-methionineC6H14NO2SChemical structure of S-methyl-L-methionine4727-40-6
Average164.246Da
Monoisotopic164.074524387Da

Displaying 1–10 of 32 metabolites