Pyrococcus abyssi GE5

CocciNon-motileAnaerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Thermococci

Order

Thermococcales

Family

Thermococcaceae

Genus

Pyrococcus

Description

Pyrococcus has similar characteristics of other archaea such as Archaeoglobus, thermoautotrophican, and Methanococcus in its that they are all thermophilic and anaerobic. Pyrococcus differs, however, because it's optimal growth temperature is nearly 100oC and dwells at a greater sea depth than the other archaeons. Studying Pyrococcus helps give insight to possible mechanisms used to endure extreme environmental conditions like high temperatures and high pressure.The cells of Pyrococcus are about 0.8- 2um and are slightly irregular cocci in shape. They show a polar grouping of flagella and are enveloped by an S-layer enclosing a periplasmic space around the cytoplasmic membrane. Pyrococcus species are anaerobic but vary slightly concerning their metabolism. Peptide fermentation is the principle metabolic pathway however, growth has been observed for P. furiosus and P. abyssi on starch, maltose, and pyruvate but not for P. horikoshii. While the presence of elemental sulfur is not needed for growth, growth is enhanced with the addition of So.Pyrococcus species inhabit environments with extremely high temperatures such as undersea hot vents. Optimal growth conditions include a pH level of about 7, a salt concentration around 2.5%, and a temperature around 98oC. Growing in temperatures this high, it is easy to see why they are anaerobic since at these boiling temperatures hardly any oxygen will be available. In the example of undersea hot vents, where P. abyssi has been found, there is no sunlight and the pressure is around 200 atm in addition to the extremely high temperature. (From http://microbewiki.kenyon.edu/index.php/Pyrococcus) (MicrobeWiki: Pyrococcus)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassThermococci
OrderThermococcales
FamilyThermococcaceae
GenusPyrococcus
SpeciesPyrococcus abyssi
StrainGE5

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature103
Temperature rangeHyperthermophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Pyrococcus abyssi GE5

Accession NumberNC_001773.1

Gene Summary

Adenine Count

747 bp

Thymine Count

1201 bp

Guanine Count

832 bp

Cytosine Count

664 bp

Genome Length

3444 bp

Protein-coding Genes

2 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
flad/flae family flagellar proteinPAB_RS08045Not Available-1454385 - 145564448373.0
flagella accessory protein cPAB_RS08050Not Available-1455648 - 145613018936.6
flagellinPAB_RS08055Not Available-1456142 - 145681023358.4
flagellinPAB_RS08060Not Available-1456821 - 145748023374.3
archaellin/type iv pilin n-terminal domain-containing proteinPAB_RS09705Not Available-1457548 - 145804517217.9
class i sam-dependent methyltransferasePAB_RS08070Not Available-1458191 - 145915336731.6
helix-turn-helix domain-containing proteinPAB_RS08075Not Available-1459164 - 145949012684.4
hypothetical proteinPAB_RS08080Not Available+1459599 - 146059438911.1
ph0542 domain-containing proteinPAB_RS08085Not Available-1460582 - 146133128404.8
trmo family methyltransferasePAB_RS08090Not Available-1461380 - 14614934334.32

Displaying genes 1661 – 1670 of 1989 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites