Mesorhizobium japonicum MAFF 303099 str. MAFF303099

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Phyllobacteriaceae

Genus

Mesorhizobium

Description

Mesorhizobium japonicum MAFF 303099 str. MAFF303099 is a Gram-negative, rod-shaped bacterium recognized for its ability to thrive in various habitats as an aerobic organism. This strain of M. japonicum is part of the larger group of rhizobia, which are well-known for their symbiotic relationships with leguminous plants, particularly in nitrogen-fixing nodules. The Gram-negative classification indicates that this bacterium possesses a thin peptidoglycan layer surrounded by an outer membrane, characteristic of many environmental and symbiotic bacteria. M. japonicum MAFF 303099 is adapted to aerobic conditions, indicating its reliance on oxygen for growth and metabolic processes. This trait is essential for its survival in different environments, as it allows for aerobic respiration, which is typically more energy-efficient compared to anaerobic processes. The flexibility to inhabit multiple habitats underscores the ecological versatility of this strain, suggesting its potential role in various soil ecosystems where it may contribute to nutrient cycling and soil health. The ecological significance of M. japonicum MAFF 303099 extends beyond its symbiotic relationships; it may also play a role in enhancing soil fertility through nitrogen fixation, thereby supporting plant growth in diverse agricultural settings. Understanding the traits and capabilities of this bacterium not only provides insights into its ecological functions but also highlights its potential applications in sustainable agriculture.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyPhyllobacteriaceae
GenusMesorhizobium
SpeciesMesorhizobium japonicum
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Mesorhizobium japonicum MAFF 303099 str. MAFF303099

Accession NumberNC_002682.1

Gene Summary

Adenine Count

41514 bp

Thymine Count

42071 bp

Guanine Count

62429 bp

Cytosine Count

62301 bp

Genome Length

208315 bp

Protein-coding Genes

227 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
udp-glucose 6-dehydrogenaseMAFF_RS41260Not Available-33519 - 337528203.13
hypothetical proteinMAFF_RS00195Not Available+34184 - 343967961.13
duf427 domain-containing proteinMAFF_RS00200Not Available+34473 - 3490715841.3
duf982 domain-containing proteinMAFF_RS37180Not Available-35661 - 3594510209.3
duf982 domain-containing proteinMAFF_RS00205Not Available-35970 - 3627511119.1
csbd family proteinMAFF_RS37185Not Available-36814 - 370178221.52
udp-glucose 6-dehydrogenaseMAFF_RS00215Not Available-37310 - 3791623381.7
udp-glucose 6-dehydrogenaseMAFF_RS40420Not Available+38122 - 3850113508.0
hypothetical proteinMAFF_RS39875Not Available-38628 - 387926330.79
udp-glucose 6-dehydrogenaseMAFF_RS00225Not Available+39259 - 3987221564.7

Displaying genes 41 – 50 of 227 in total

Pathways

7 pathways

Metabolites

15 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002759dTDP-beta-L-rhamnoseC16H24N2O15P2Not availableNot available
Average546.316Da
Monoisotopic546.066289237Da
BASm0004122ADP-L-glycero-beta-D-manno-heptoseC17H25N5O16P2Chemical structure of ADP-L-glycero-beta-D-manno-heptoseNot available
Average617.355Da
Monoisotopic617.078250901Da
BASm0004172(R)-4'-phosphopantetheineC11H21N2O7PSChemical structure of (R)-4'-phosphopantetheineNot available
Average356.33Da
Monoisotopic356.081806356Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm0017265Uridine diphosphate-N-acetylglucosamineC17H27N3O17P2Chemical structure of Uridine diphosphate-N-acetylglucosamine528-04-1
Average607.3537Da
Monoisotopic607.081569477Da
BASm0017310dTDP-D-GlucoseC16H26N2O16P2Chemical structure of dTDP-D-Glucose2196-62-5
Average564.329Da
Monoisotopic564.075755818Da
BASm0017530ADP-D-Glycero-D-manno-heptoseC17H27N5O16P2Chemical structure of ADP-D-Glycero-D-manno-heptoseNULL
Average619.3677Da
Monoisotopic619.092802865Da

Displaying 1–10 of 15 metabolites