Vibrio cholerae O1 biovar El Tor str. N16961

Gram-negativeCurvedShapedMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio cholerae O1 biovar ElTor str. N16961.This is an epidemic serogroup of Vibrio cholerae isolated in 1971 in Bangladesh and is distinguished from the classical biotype due to hemolysin production. It contains 2 chromosomes. The first, and larger chromosome, contains many essential cell functions, as well as virulence genes contained within pathogenicity islands (PAIs). One major pathogenicity determinant is encoded within a PAI that is contained inside an integrated phage (CTXphi) on chromosome 1 that codes for the cholera toxin, an adenylate cyclase. Once the toxin is injected into host cells, it results in secretion of chlorine ions, which leads to increased water secretion, dehydration, and eventually, death. Up to 20 litres of water a day may be lost. The second chromosome also has important cell functions, but has a preponderance of genes associated with energy and transport functions, including signal transduction systems, and in addition, DNA repair enzymes. Chromosome 2 also has the integron island, a large variable region of the chromosome that functions as a gene capture system, some of which are associated with antibiotic resistance. There are 105 genes that have copies on both chromosomes. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio cholerae
StrainN16961

Profile

Physiology
Gram staining propertiesNegative
ShapeCurvedShaped
MobilityYes
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityYes

Genome Summary

Vibrio cholerae O1 biovar El Tor str. N16961

Accession NumberNC_002505.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
trna (uridine(54)-c5)-methyltransferase trmaVC_RS00710Not Available-143863 - 14497242580.2
tonb-dependent vitamin b12 receptorVC_RS00715Not Available+145370 - 14720568613.2
s8 family peptidaseVC_RS00720Not Available-147278 - 14888556864.4
glutamate racemaseVC_RS00725Not Available+149278 - 15007529197.8
rna recognition motif domain-containing proteinVC_RS00730Not Available-150041 - 15049916716.1
16s ribosomal rnaNot AvailableNot Available+151052 - 152594Not Available
Trna-gluNot AvailableNot Available+152663 - 152738Not Available
23s ribosomal rnaNot AvailableNot Available+153026 - 155912Not Available
5s ribosomal rnaNot AvailableNot Available+156043 - 156158Not Available
Trna-serNot AvailableNot Available+156206 - 156296Not Available

Displaying genes 161 – 170 of 3711 in total

Pathways

22 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

83 records
Metabolite IDMetabolite nameStructureCAS number
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm0017395CDP-DG(16:0/18:1(9Z))C46H83N3O15P2Chemical structure of CDP-DG(16:0/18:1(9Z))NULL
Average980.124Da
Monoisotopic979.529942981Da
BASm0017399CDP-DG(18:0/18:1(9Z))C48H87N3O15P2Chemical structure of CDP-DG(18:0/18:1(9Z))NULL
Average1008.178Da
Monoisotopic1007.561243109Da

Displaying 1–10 of 83 metabolites