Methylorubrum populi str. CD11_7

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Methylobacteriaceae

Genus

Methylorubrum

Description

Methylorubrum populi strain CD11_7 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This methylotrophic organism thrives optimally at a temperature of 20.0°C and requires oxygen for its metabolic processes, classifying it as an aerobe. Methylorubrum populi's ability to utilize methanol and other one-carbon compounds as energy sources highlights its potential role in the carbon cycle, particularly in environments where such substrates are prevalent. The habitat of Methylorubrum populi is described as host-associated, suggesting a symbiotic or associative relationship with its host. This association may facilitate the bacterium's growth and survival, as well as contribute to the metabolic processes of the host organism. Given its methylotrophic nature, Methylorubrum populi could play a significant role in the degradation of organic compounds and the recycling of carbon in its ecological niche. Understanding the specific interactions between Methylorubrum populi and its host could provide insights into the broader implications of methylotrophic bacteria in environmental microbiology and their potential applications in biotechnology, particularly in bioremediation or bioenergy.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylorubrum
SpeciesMethylorubrum populi
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Methylorubrum populi str. CD11_7
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNot Available

Genome Summary

Methylorubrum populi str. CD11_7

Accession NumberLSNC00000000.1

Gene Summary

Adenine Count

1088563 bp

Thymine Count

1083443 bp

Guanine Count

2421364 bp

Cytosine Count

2426968 bp

Genome Length

7020557 bp

Protein-coding Genes

6268 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinAX289_30550Not Available-27380 - 2783216397.5
hypothetical proteinAX289_30555Not Available-27829 - 2826616448.8
hypothetical proteinAX289_30560Not Available-28268 - 285048877.54
hypothetical proteinAX289_30570Not Available-29615 - 3054133998.1
hypothetical proteinAX289_30575Not Available-30547 - 3089412238.6
hypothetical proteinAX289_30580Not Available-30887 - 310937781.27
hypothetical proteinAX289_30585Not Available-31170 - 313706958.05
hypothetical proteinAX289_30590Not Available-31546 - 3229826879.4
hypothetical proteinAX289_30595Not Available-32298 - 3261210299.2
hypothetical proteinAX289_30600Not Available-32609 - 3299813787.4

Displaying genes 41 – 50 of 6340 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

324 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da

Displaying 1–10 of 324 metabolites