Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Vibrio
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Vibrio |
| Species | Vibrio parahaemolyticus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | Aquatic |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Nonsporulating |
| Energy source | Heterotroph |
| Pathogenicity | Yes |
Genome Summary
Vibrio parahaemolyticus RIMD 2210633
Accession NumberNC_004603.1
Gene Summary
Adenine Count
893352 bp
Thymine Count
902673 bp
Guanine Count
745919 bp
Cytosine Count
746614 bp
Genome Length
3288558 bp
Protein-coding Genes
2887 genes
Non-Coding Genes
154 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| amino acid abc transporter permease | VP_RS00040 | P52625 | - | 5718 - 6389 | 24959.5 |
| amino acid abc transporter substrate-binding protein | VP_RS00045 | P52626 | - | 6505 - 7251 | 27503.8 |
| chromosomal replication initiator protein dnaa | VP_RS00050 | Q87TQ7 | + | 7680 - 9086 | 53052.2 |
| dna polymerase iii subunit beta | VP_RS00055 | Q9KVX5 | + | 9150 - 10250 | 40658.7 |
| dna replication/repair protein recf | VP_RS00060 | Q87TQ5 | + | 10260 - 11339 | 40933.9 |
| dna topoisomerase (atp-hydrolyzing) subunit b | VP_RS00065 | O51859 | + | 11353 - 13770 | 89447.3 |
| grea/greb family elongation factor | VP_RS00070 | Not Available | + | 14119 - 14535 | 16163.6 |
| hsp20 family protein | VP_RS00075 | Q6CYV2 | + | 15073 - 15510 | 16503.6 |
| valine--pyruvate transaminase | VP_RS00080 | P09053 | - | 15595 - 16848 | 46587.8 |
| alpha-amylase | VP_RS00085 | P25718 | - | 17066 - 19150 | 78698.4 |
Pathways
6 pathways
PreQ0 Metabolism
PreQ0 Metabolism
Selenium Metabolism
Selenium Metabolism
Guanine and Guanosine Salvage
Guanine and Guanosine Salvage
O-Antigen Building Blocks Biosynthesis
O-Antigen Building Blocks Biosynthesis
Virulence (virB operon activation)
Virulence (virB operon activation)
Palmitate Biosynthesis 2
Palmitate Biosynthesis 2

