Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Vibrio
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Vibrio |
| Species | Vibrio parahaemolyticus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | Aquatic |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Nonsporulating |
| Energy source | Heterotroph |
| Pathogenicity | Yes |
Genome Summary
Vibrio parahaemolyticus RIMD 2210633
Accession NumberNC_004603.1
Gene Summary
Adenine Count
893352 bp
Thymine Count
902673 bp
Guanine Count
745919 bp
Cytosine Count
746614 bp
Genome Length
3288558 bp
Protein-coding Genes
2887 genes
Non-Coding Genes
154 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aminoacyl-trna hydrolase | VP_RS03645 | Q87RN9 | - | 775904 - 776494 | 21374.1 |
| ribose-phosphate pyrophosphokinase | VP_RS03650 | Q87RN8 | - | 776646 - 777590 | 33934.8 |
| 4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinase | VP_RS03655 | Q87RN7 | - | 777619 - 778506 | 32499.5 |
| lipoprotein insertase outer membrane protein lolb | VP_RS03660 | Q87RN6 | - | 778488 - 779126 | 24031.9 |
| glutamyl-trna reductase | VP_RS03665 | Q87RN5 | + | 779261 - 780517 | 45754.7 |
| peptide chain release factor 1 | VP_RS03670 | Q87RN4 | + | 780547 - 781635 | 40296.3 |
| peptide chain release factor n(5)-glutamine methyltransferase | VP_RS03675 | Q9KQ26 | + | 781639 - 782496 | 31334.1 |
| sirb2 family protein | VP_RS03680 | Q46755 | + | 782538 - 782921 | 13983.8 |
| sirb1 family protein | VP_RS03685 | Q9KQ28 | + | 782927 - 783736 | 31275.1 |
| 3-deoxy-8-phosphooctulonate synthase | VP_RS03690 | Q87RN0 | + | 783791 - 784642 | 30811.2 |
Pathways
6 pathways
PreQ0 Metabolism
PreQ0 Metabolism
Selenium Metabolism
Selenium Metabolism
Guanine and Guanosine Salvage
Guanine and Guanosine Salvage
O-Antigen Building Blocks Biosynthesis
O-Antigen Building Blocks Biosynthesis
Virulence (virB operon activation)
Virulence (virB operon activation)
Palmitate Biosynthesis 2
Palmitate Biosynthesis 2

