Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Vibrio
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Vibrio |
| Species | Vibrio parahaemolyticus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 20 |
| Temperature range | Mesophilic |
| Habitat | Aquatic |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Nonsporulating |
| Energy source | Heterotroph |
| Pathogenicity | Yes |
Genome Summary
Vibrio parahaemolyticus RIMD 2210633
Accession NumberNC_004603.1
Gene Summary
Adenine Count
893352 bp
Thymine Count
902673 bp
Guanine Count
745919 bp
Cytosine Count
746614 bp
Genome Length
3288558 bp
Protein-coding Genes
2887 genes
Non-Coding Genes
154 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fe-s cluster assembly protein iscx | VP_RS02895 | P0C0M0 | + | 627266 - 627460 | 7688.97 |
| aminopeptidase pepb | VP_RS02900 | Q87S21 | + | 627632 - 628930 | 46614.2 |
| nucleoside-diphosphate kinase | VP_RS02905 | Q87S20 | + | 629017 - 629442 | 15865.9 |
| bifunctional trna (adenosine(37)-c2)-methyltransferase trmg/ribosomal rna large subunit methyltransferase rlmn | VP_RS02910 | Q87S19 | + | 629662 - 630789 | 42114.8 |
| cytoskeleton protein rodz | VP_RS02915 | A1JKS1 | + | 631203 - 632153 | 34696.0 |
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | VP_RS02920 | Q87S16 | + | 632160 - 633278 | 40691.1 |
| histidine--trna ligase | VP_RS02925 | Q87S15 | + | 633305 - 634573 | 47148.5 |
| yfgm family protein | VP_RS02930 | P43989 | + | 634699 - 635313 | 22326.0 |
| outer membrane protein assembly factor bamb | VP_RS02935 | Q9KTW8 | + | 635329 - 636489 | 41520.3 |
| ribosome biogenesis gtpase der | VP_RS02940 | Q87S12 | + | 636657 - 638153 | 55817.9 |
Pathways
6 pathways
PreQ0 Metabolism
PreQ0 Metabolism
Selenium Metabolism
Selenium Metabolism
Guanine and Guanosine Salvage
Guanine and Guanosine Salvage
O-Antigen Building Blocks Biosynthesis
O-Antigen Building Blocks Biosynthesis
Virulence (virB operon activation)
Virulence (virB operon activation)
Palmitate Biosynthesis 2
Palmitate Biosynthesis 2

