Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 5-(carboxyamino)imidazole ribonucleotide synthase | PFL_RS31045 | Not Available | - | 6955067 - 6956149 | 38839.4 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | PFL_RS31050 | Not Available | - | 6956161 - 6956652 | 16857.6 |
| lysr substrate-binding domain-containing protein | PFL_RS31055 | Not Available | - | 6957393 - 6958307 | 33166.2 |
| aspartate ammonia-lyase | PFL_RS31060 | Not Available | + | 6958489 - 6959913 | 51066.0 |
| duf6124 family protein | PFL_RS31065 | Not Available | + | 6960395 - 6960751 | 12897.5 |
| hypothetical protein | PFL_RS31070 | Not Available | + | 6960955 - 6961680 | 28016.2 |
| hypothetical protein | PFL_RS31075 | Not Available | + | 6961779 - 6962426 | 24438.7 |
| beta-ketoacyl-acp synthase 3 | PFL_RS31080 | Not Available | + | 6962474 - 6963493 | 35516.2 |
| nad(p)-dependent oxidoreductase | PFL_RS31085 | Not Available | + | 6963493 - 6964500 | 37101.2 |
| mbl fold metallo-hydrolase | PFL_RS31090 | Not Available | + | 6964497 - 6965351 | 31243.5 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


