Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system-associated fha domain protein tagh | PFL_RS30845 | Not Available | - | 6911065 - 6912549 | 53763.6 |
| type vi secretion system protein tssa | PFL_RS30850 | Not Available | + | 6912942 - 6913961 | 36253.5 |
| type vi secretion system contractile sheath small subunit | PFL_RS30855 | Not Available | + | 6914043 - 6914558 | 18732.6 |
| type vi secretion system contractile sheath large subunit | PFL_RS30860 | Not Available | + | 6914575 - 6916068 | 55605.6 |
| type vi secretion system tube protein hcp | PFL_RS30865 | Not Available | + | 6916187 - 6916675 | 17663.1 |
| type vi secretion system baseplate subunit tsse | PFL_RS30870 | Not Available | + | 6916836 - 6917351 | 18811.5 |
| type vi secretion system baseplate subunit tssf | PFL_RS30875 | Not Available | + | 6917348 - 6919207 | 69412.7 |
| type vi secretion system baseplate subunit tssg | PFL_RS30880 | Not Available | + | 6919171 - 6920223 | 39572.8 |
| type vi secretion system atpase tssh | PFL_RS30885 | Not Available | + | 6920216 - 6922891 | 97943.7 |
| type vi secretion system vgr family protein | PFL_RS30890 | Not Available | + | 6923022 - 6924959 | 72002.3 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


