Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| duf4124 domain-containing protein | PFL_RS01960 | Not Available | - | 437837 - 438343 | 18137.7 |
| chorismate mutase | PFL_RS01965 | Not Available | - | 438412 - 438966 | 20250.2 |
| glutamate--ammonia ligase | PFL_RS01970 | Not Available | - | 439104 - 440510 | 51796.3 |
| trna uracil 4-sulfurtransferase thii | PFL_RS01975 | Not Available | + | 440842 - 442296 | 54322.2 |
| translational gtpase typa | PFL_RS01980 | Not Available | + | 442436 - 444256 | 67156.6 |
| ykgj family cysteine cluster protein | PFL_RS01985 | Not Available | - | 444526 - 444966 | 16807.4 |
| glycogen/starch/alpha-glucan phosphorylase | PFL_RS01990 | Not Available | + | 445236 - 447686 | 92351.0 |
| duf2339 domain-containing protein | PFL_RS01995 | Not Available | + | 447892 - 451524 | 129959.0 |
| duf3999 domain-containing protein | PFL_RS02000 | Not Available | + | 451521 - 452894 | 48964.3 |
| class 1 fructose-bisphosphatase | PFL_RS02005 | Not Available | + | 453081 - 454091 | 37159.5 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


