Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phosphoenolpyruvate carboxykinase | PFL_RS01460 | Not Available | + | 330006 - 331550 | 55588.0 |
| dmt family transporter | PFL_RS01465 | Not Available | - | 331666 - 332520 | 29667.6 |
| duf1493 family protein | PFL_RS01470 | Not Available | - | 332561 - 332914 | 13569.3 |
| yfap family protein | PFL_RS01475 | Not Available | + | 333148 - 334305 | 42118.8 |
| polysaccharide deacetylase family protein | PFL_RS01480 | Not Available | + | 334373 - 335503 | 42313.3 |
| atp-dependent dna helicase recq | PFL_RS01485 | Not Available | + | 335672 - 337606 | 72248.6 |
| 3-hydroxyacyl-coa dehydrogenase | PFL_RS01490 | Not Available | + | 337711 - 338937 | 44450.3 |
| thioesterase family protein | PFL_RS01495 | Not Available | + | 339005 - 339439 | 15963.9 |
| ymgg-like glycine zipper-containing protein | PFL_RS01500 | Not Available | - | 339621 - 340094 | 15268.9 |
| fdhf/ydep family oxidoreductase | PFL_RS01505 | Not Available | - | 340394 - 342742 | 86265.2 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


