Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ydga family protein | PFL_RS00825 | Not Available | + | 186363 - 187865 | 53615.1 |
| poly-beta-1,6 n-acetyl-d-glucosamine export porin pgaa | PFL_RS00830 | Not Available | + | 188141 - 190627 | 91970.5 |
| poly-beta-1,6-n-acetyl-d-glucosamine n-deacetylase pgab | PFL_RS00835 | Not Available | + | 190642 - 192639 | 74512.5 |
| poly-beta-1,6-n-acetyl-d-glucosamine synthase | PFL_RS00840 | Not Available | + | 192643 - 193992 | 51487.1 |
| poly-beta-1,6-n-acetyl-d-glucosamine biosynthesis protein pgad | PFL_RS00845 | Not Available | + | 193992 - 194516 | 19931.3 |
| phosphomannomutase/phosphoglucomutase | PFL_RS00850 | Not Available | + | 195104 - 195319 | 8263.62 |
| hemagglutinin repeat-containing protein | PFL_RS00855 | Not Available | + | 195347 - 204481 | 313206.0 |
| hypothetical protein | PFL_RS32510 | Not Available | + | 204484 - 204744 | 9948.85 |
| helix-turn-helix domain-containing protein | PFL_RS00865 | Not Available | - | 205065 - 205469 | 15343.3 |
| venn motif pre-toxin domain-containing protein | PFL_RS33020 | Not Available | + | 205535 - 206584 | 36522.9 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


