Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aminoacyl-trna deacylase | PFL_RS00775 | Not Available | + | 178915 - 179376 | 16908.2 |
| duf2789 domain-containing protein | PFL_RS00780 | Not Available | + | 179391 - 179636 | 9045.65 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | PFL_RS00785 | Not Available | + | 179701 - 179946 | 8799.63 |
| type ii toxin-antitoxin system rele/pare family toxin | PFL_RS00790 | Not Available | + | 179936 - 180217 | 10840.3 |
| marr family winged helix-turn-helix transcriptional regulator | PFL_RS00795 | Not Available | + | 180360 - 180788 | 15395.7 |
| fusc family protein | PFL_RS00800 | Not Available | + | 180785 - 182872 | 77117.8 |
| duf1656 domain-containing protein | PFL_RS00805 | Not Available | + | 182869 - 183078 | 7796.93 |
| hlyd family secretion protein | PFL_RS00810 | Not Available | + | 183075 - 183965 | 32984.5 |
| efflux transporter outer membrane subunit | PFL_RS00815 | Not Available | + | 183962 - 185410 | 51274.5 |
| hypothetical protein | PFL_RS00820 | Not Available | + | 185504 - 186139 | 24015.9 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


