Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cyclic di-gmp receptor lapd | PFL_RS00675 | Not Available | + | 137776 - 139722 | 71774.5 |
| hypothetical protein | PFL_RS00680 | Not Available | - | 139816 - 140154 | 12520.0 |
| retention module-containing protein | PFL_RS00685 | Not Available | - | 140316 - 155078 | 487439.0 |
| tolc family outer membrane protein | PFL_RS00690 | Not Available | + | 155440 - 156792 | 49931.9 |
| type i secretion system permease/atpase | PFL_RS00695 | Not Available | + | 156831 - 158984 | 78520.6 |
| hlyd family type i secretion periplasmic adaptor subunit | PFL_RS00700 | Not Available | + | 158974 - 160341 | 50797.5 |
| taud/tfda family dioxygenase | PFL_RS00705 | Not Available | + | 160625 - 161512 | 32918.0 |
| abc transporter substrate-binding protein | PFL_RS00710 | Not Available | + | 161552 - 162577 | 37139.2 |
| abc transporter atp-binding protein | PFL_RS00715 | Not Available | + | 162583 - 163443 | 31969.8 |
| abc transporter permease | PFL_RS00720 | Not Available | + | 163477 - 164343 | 31751.8 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


