Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| catalase hpii | PFL_RS00375 | Not Available | + | 71269 - 73461 | 80767.6 |
| pa5502 family lipoprotein | PFL_RS00380 | Not Available | - | 73518 - 74237 | 25921.2 |
| zinc abc transporter permease subunit znub | PFL_RS00385 | Not Available | - | 74275 - 75063 | 27310.9 |
| zinc abc transporter atp-binding protein znuc | PFL_RS00390 | Not Available | - | 75056 - 75841 | 28241.3 |
| zinc uptake transcriptional repressor zur | PFL_RS00395 | Not Available | - | 75841 - 76323 | 17405.9 |
| zinc abc transporter substrate-binding protein | PFL_RS00400 | Not Available | + | 76390 - 77310 | 33272.0 |
| homoserine kinase | PFL_RS00405 | Not Available | - | 77402 - 78352 | 35096.5 |
| duf2782 domain-containing protein | PFL_RS00410 | Not Available | - | 78418 - 78705 | 10580.7 |
| dna polymerase i | PFL_RS00415 | Not Available | + | 78780 - 81569 | 101410.0 |
| ribosome biogenesis gtp-binding protein yiha/ysxc | PFL_RS00420 | Not Available | - | 81985 - 82626 | 23581.7 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


