Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PFL_RS03355 | Not Available | - | 769475 - 769927 | 16890.8 |
| hypothetical protein | PFL_RS03360 | Not Available | - | 769961 - 770638 | 24529.1 |
| hypothetical protein | PFL_RS03365 | Not Available | - | 770642 - 771550 | 33144.9 |
| marc family protein | PFL_RS03370 | Not Available | - | 771589 - 772185 | 21436.1 |
| hybrid sensor histidine kinase/response regulator | PFL_RS03375 | Not Available | - | 772250 - 775036 | 101882.0 |
| phosphoribosylamine--glycine ligase | PFL_RS03380 | Not Available | - | 775135 - 776424 | 45295.3 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | PFL_RS03385 | Not Available | - | 776613 - 778220 | 57310.6 |
| dna-binding transcriptional regulator fis | PFL_RS03390 | Not Available | - | 778303 - 778623 | 11706.1 |
| trna dihydrouridine synthase dusb | PFL_RS03395 | Not Available | - | 778620 - 779633 | 36443.9 |
| duf3426 domain-containing protein | PFL_RS03400 | Not Available | - | 779829 - 781133 | 47791.0 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


