Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fad-binding oxidoreductase | PFL_RS02705 | Not Available | - | 622013 - 623188 | 41543.4 |
| multidrug efflux smr transporter | PFL_RS02710 | Not Available | - | 623299 - 623631 | 11605.0 |
| lysr family transcriptional regulator | PFL_RS02715 | Not Available | + | 623742 - 624626 | 33019.8 |
| lipid iv(a) 3-deoxy-d-manno-octulosonic acid transferase | PFL_RS02720 | Not Available | + | 624649 - 625929 | 46859.3 |
| tolc family outer membrane protein | PFL_RS02725 | Not Available | - | 626029 - 627459 | 52647.3 |
| phosphomethylpyrimidine synthase thic | PFL_RS02730 | Not Available | + | 627925 - 629814 | 69829.3 |
| putative hydroxymethylpyrimidine transporter cytx | PFL_RS02735 | Not Available | + | 629928 - 631220 | 45492.6 |
| rsiv family protein | PFL_RS02740 | Not Available | - | 631189 - 631935 | 27510.2 |
| nudix domain-containing protein | PFL_RS02745 | Not Available | + | 632160 - 632777 | 23003.4 |
| duf1249 domain-containing protein | PFL_RS02750 | Not Available | + | 632768 - 633220 | 17243.9 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


