Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | PFL_RS31195 | Not Available | - | 6988650 - 6988919 | 9881.2 |
| type ii toxin-antitoxin system hipa family toxin | PFL_RS31200 | Not Available | - | 6988916 - 6990190 | 47112.8 |
| sodium-extruding oxaloacetate decarboxylase subunit alpha | PFL_RS31205 | Not Available | - | 6990423 - 6992231 | 65576.1 |
| acetyl-coa carboxylase biotin carboxylase subunit | PFL_RS31210 | Not Available | - | 6992243 - 6993658 | 51941.4 |
| lysr family transcriptional regulator | PFL_RS31215 | Not Available | + | 6993849 - 6994811 | 36264.3 |
| pa3496 family putative envelope integrity protein | PFL_RS33355 | Not Available | - | 6994753 - 6994965 | 8475.87 |
| transcriptional regulator hexr | PFL_RS31220 | Not Available | - | 6995151 - 6996017 | 31065.7 |
| bifunctional diguanylate cyclase/phosphodiesterase | PFL_RS31225 | Not Available | - | 6996185 - 6999049 | 106989.0 |
| dna helicase ii | PFL_RS31230 | Not Available | + | 6999297 - 7001480 | 80987.3 |
| eama family transporter | PFL_RS31235 | Not Available | + | 7001605 - 7002045 | 15560.5 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


