Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein 1a | PFL_RS02260 | Not Available | - | 509039 - 511474 | 88692.8 |
| type iv pilus assembly protein pilm | PFL_RS02265 | Not Available | + | 511691 - 512752 | 37890.1 |
| piln domain-containing protein | PFL_RS02270 | Not Available | + | 512752 - 513318 | 20981.4 |
| type 4a pilus biogenesis protein pilo | PFL_RS02275 | Not Available | + | 513315 - 513938 | 23338.2 |
| pilus assembly protein pilp | PFL_RS02280 | Not Available | + | 513935 - 514465 | 19326.2 |
| phosphomannomutase/phosphoglucomutase | PFL_RS02285 | Not Available | + | 514555 - 516231 | 60457.8 |
| shikimate kinase arok | PFL_RS02290 | Not Available | + | 516236 - 516754 | 19255.5 |
| 3-dehydroquinate synthase | PFL_RS02295 | Not Available | + | 516900 - 518000 | 39957.3 |
| spor domain-containing protein | PFL_RS02300 | Not Available | + | 518011 - 519591 | 54744.2 |
| glutamate synthase large subunit | PFL_RS02305 | Not Available | + | 519940 - 524388 | 162352.0 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


