Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sumf1/egtb/pvdo family nonheme iron enzyme | PFL_RS30795 | Not Available | - | 6896215 - 6897897 | 61132.5 |
| abc transporter permease | PFL_RS30800 | Not Available | - | 6897920 - 6899122 | 42335.6 |
| abc transporter atp-binding protein | PFL_RS30805 | Not Available | - | 6899122 - 6899838 | 25559.0 |
| serine/threonine-protein kinase | PFL_RS30810 | Not Available | - | 6899838 - 6902921 | 110419.0 |
| pp2c family serine/threonine-protein phosphatase | PFL_RS30815 | Not Available | - | 6902924 - 6903658 | 26260.0 |
| type vi secretion system-associated protein tagf | PFL_RS30820 | Not Available | - | 6903659 - 6904312 | 22966.4 |
| type vi secretion system membrane subunit tssm | PFL_RS30825 | Not Available | - | 6904309 - 6907815 | 128587.0 |
| dotu family type vi secretion system protein | PFL_RS30830 | Not Available | - | 6907812 - 6909137 | 48183.1 |
| type vi secretion system baseplate subunit tssk | PFL_RS30835 | Not Available | - | 6909144 - 6910478 | 48690.3 |
| type vi secretion system lipoprotein tssj | PFL_RS30840 | Not Available | - | 6910494 - 6911000 | 18115.8 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


