Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas protegens |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | 25 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Heterotroph |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas protegens Pf-5
Accession NumberNC_004129.6
Gene Summary
Adenine Count
1305352 bp
Thymine Count
1290785 bp
Guanine Count
2232065 bp
Cytosine Count
2246691 bp
Genome Length
7074893 bp
Protein-coding Genes
6201 genes
Non-Coding Genes
210 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | PFL_RS30595 | Not Available | - | 6857753 - 6858301 | 20010.0 |
| alanine racemase | PFL_RS30600 | Not Available | - | 6858433 - 6859506 | 38903.1 |
| rida family protein | PFL_RS30605 | Not Available | - | 6859598 - 6859951 | 12805.5 |
| d-amino acid dehydrogenase | PFL_RS30610 | Not Available | - | 6859923 - 6861224 | 47107.6 |
| lrp/asnc ligand binding domain-containing protein | PFL_RS30615 | Not Available | + | 6861381 - 6861869 | 18693.8 |
| ykgj family cysteine cluster protein | PFL_RS30620 | Not Available | - | 6861911 - 6862264 | 13137.9 |
| fad-binding oxidoreductase | PFL_RS30625 | Not Available | + | 6862413 - 6863705 | 46431.1 |
| duf1127 domain-containing protein | PFL_RS30630 | Not Available | - | 6863733 - 6863978 | 9219.15 |
| plp-dependent aminotransferase family protein | PFL_RS30635 | Not Available | + | 6864158 - 6865582 | 52587.0 |
| phospholipase d family protein | PFL_RS30640 | Not Available | + | 6865649 - 6867217 | 58261.7 |
Pathways
26 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Amino acid degradation
Amino acid degradation
Fatty acid degradation
Fatty acid degradation
Fatty acid degradation Pf5
Fatty acid degradation Pf5


